SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_054500500
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Bone marrow
Biosample name: K562 WT
Genomic region: chr19:45505256-45516261
Size: 11005
Super-enhancer rank 500
Number of SE elements: 3
ChIP density(Case|Control): 44722.119|1377.826
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: VASP ;
ROSE Overlap VASP ;
ROSE Proximal PPM1N ; FOSB ; RTN2 ;
ROSE Closest VASP ;
Lasso GIPR ; PPM1N ; PPP1R13L ; QPCTL ; ERCC1 ; DMPK ; CD3EAP ; VASP ; GPR4 ; RTN2 ; EML2 ; SNRPD2 ;
PreSTIGE ;
ABC ;
BETA ERCC1 ; GPR4 ; MIR6088 ; VASP ; FOSB ; PPM1N ; OPA3 ; RTN2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_054500500 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers