SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_053001039
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mammary gland
Biosample name: MCF10A
Genomic region: chr3:48429707-48436120
Size: 6413
Super-enhancer rank 1039
Number of SE elements: 1
ChIP density(Case|Control): 11038.6969|1036.9821
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PLXNB1;
ROSE Overlap PLXNB1; CCDC51;
ROSE Proximal TMA7; ATRIP; PLXNB1; CCDC51; SHISA5; TREX1;
ROSE Closest PLXNB1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_053001039 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers