SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_049600039
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: C49R
Genomic region: chr1:228623801-228642066
Size: 18265
Super-enhancer rank 39
Number of SE elements: 13
ChIP density(Case|Control): 41993.0615|19351.7675
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNA5S9;
ROSE Overlap MIR7641-2; RNA5S9; RNA5S1;
ROSE Proximal RNA5S2; RNA5S3; RNA5S4; RHOU; RNA5S5; RNA5S6; RNA5S10; DUSP5P1; RNA5S15;
ROSE Closest RNA5S9;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_049600039 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers