SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_049400522
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Islets
Biosample name: differentiated hESCs Late pancreatic progenitor cells
Genomic region: chr12:54077899-54089218
Size: 11319
Super-enhancer rank 522
Number of SE elements: 4
ChIP density(Case|Control): 12660.3015|1843.8651
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC100240735 ;
ROSE Overlap LOC100240735 ; FLJ12825 ;
ROSE Proximal LOC100240734 ; HOXC4 ; LOC400043 ; HOXC5 ; HOXC6 ; MIR615 ;
ROSE Closest LOC100240735 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HOXC4 ; HOXC6 ; HOXC-AS3 ; LOC100240735 ; LOC100240734 ; LOC400043 ; HOXC5 ; FLJ12825 ; HOXC-AS2 ; HOXC-AS1 ; HOXC8 ; HOXC10 ; HOXC9 ; MIR615 ; MIR196A2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_049400522 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers