SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_049400504
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Islets
Biosample name: differentiated hESCs Late pancreatic progenitor cells
Genomic region: chr12:54257498-54263053
Size: 5555
Super-enhancer rank 504
Number of SE elements: 3
ChIP density(Case|Control): 11858.814|892.133
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CBX5 ;
ROSE Overlap CBX5 ;
ROSE Proximal NFE2 ; MIR3198-2 ; HNRNPA1 ;
ROSE Closest CBX5 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CBX5 ; SMUG1 ; COPZ1 ; NFE2 ; LOC102724050 ; HNRNPA1 ; MIR3198-2 ; MIR148B ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_049400504 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers