SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700554
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr12:65934308-65962255
Size: 27947
Super-enhancer rank 554
Number of SE elements: 2
ChIP density(Case|Control): 51129.0365|5642.4993
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPSAP52 ;
ROSE Overlap HMGA2 ;
ROSE Proximal ;
ROSE Closest RPSAP52 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LOC100129940 ; MIR6074 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700554 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers