SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700547
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr9:89309045-89320219
Size: 11174
Super-enhancer rank 547
Number of SE elements: 1
ChIP density(Case|Control): 46965.4394|1070.4692
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR3153 ;
ROSE Overlap MIR3153 ; CKS2 ; SECISBP2 ;
ROSE Proximal ;
ROSE Closest MIR3153 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CKS2 ; SECISBP2 ; MIR3153 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700547 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers