SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_042700545
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr5:45382367-45388015
Size: 5648
Super-enhancer rank 545
Number of SE elements: 1
ChIP density(Case|Control): 46546.2976|593.6048
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MRPS30 ;
ROSE Overlap HCN1 ;
ROSE Proximal ;
ROSE Closest HCN1 ;
Lasso ;
PreSTIGE ;
ABC MRPS30 ; BRCAT54 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700545 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers