SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700526
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr17:7230039-7244144
Size: 14105
Super-enhancer rank 526
Number of SE elements: 1
ChIP density(Case|Control): 48691.8705|1187.641
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PHF23 ;
ROSE Overlap CTDNEP1 ; GABARAP ; DVL2 ; PHF23 ;
ROSE Proximal ACADVL ; DLG4 ; C17orf81 ; CLDN7 ; MIR324 ; SLC2A4 ;
ROSE Closest PHF23 ;
Lasso ;
PreSTIGE ;
ABC NEURL4 ; ACAP1 ;
BETA PHF23 ; ELP5 ; DVL2 ; SLC2A4 ; ACADVL ; DLG4 ; EIF5A ; CTDNEP1 ; GPS2 ; NEURL4 ; CLDN7 ; ASGR1 ; ACAP1 ; YBX2 ; MIR324 ; GABARAP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700526 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers