SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_042700509
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr19:4864137-4872966
Size: 8829
Super-enhancer rank 509
Number of SE elements: 1
ChIP density(Case|Control): 48832.3161|540.3348
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PLIN3 ;
ROSE Overlap PLIN3 ;
ROSE Proximal PLIN3 ; TICAM1 ; UHRF1 ; ARRDC5 ;
ROSE Closest PLIN3 ;
Lasso ;
PreSTIGE ;
ABC PLIN3 ; TICAM1 ; UHRF1 ; KDM4B ;
BETA PLIN3 ; UHRF1 ; MIR4747 ; ARRDC5 ; MIR7-3 ; MIR7-3HG ; FEM1A ; TICAM1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700509 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers