SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_042700497
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr16:68919921-68937571
Size: 17650
Super-enhancer rank 497
Number of SE elements: 3
ChIP density(Case|Control): 50551.365|1556.73
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMCO7 ;
ROSE Overlap TMCO7 ;
ROSE Proximal ;
ROSE Closest TMCO7 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TANGO6 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700497 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers