SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700463
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr6:16709894-16730565
Size: 20671
Super-enhancer rank 463
Number of SE elements: 2
ChIP density(Case|Control): 53628.8424|2298.6152
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ATXN1 ;
ROSE Overlap ATXN1 ;
ROSE Proximal ;
ROSE Closest ATXN1 ;
Lasso ;
PreSTIGE ;
ABC ATXN1 ; LOC101928433 ; GMPR ; STMND1 ; RBM24 ; MYLIP ; DTNBP1 ; CAP2 ; FAM8A1 ; KIF13A ; DEK ;
BETA ATXN1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700463 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers