SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_042700459
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr4:10092312-10130520
Size: 38208
Super-enhancer rank 459
Number of SE elements: 4
ChIP density(Case|Control): 54824.6592|3278.2464
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: WDR1 ;
ROSE Overlap WDR1 ;
ROSE Proximal MIR3138 ;
ROSE Closest WDR1 ;
Lasso ;
PreSTIGE ;
ABC WDR1 ; ZNF518B ;
BETA WDR1 ; SLC2A9 ; MIR3138 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700459 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers