SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700414
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr17:35078926-35096461
Size: 17535
Super-enhancer rank 414
Number of SE elements: 2
ChIP density(Case|Control): 56392.56|1758.7605
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RFFL ;
ROSE Overlap RFFL ;
ROSE Proximal RAD51L3 ; NLE1 ; RFFL ; FNDC8 ;
ROSE Closest RFFL ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RAD51D ; NLE1 ; UNC45B ; RFFL ; FNDC8 ; RAD51L3-RFFL ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700414 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers