SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_042700408
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr12:12716190-12727704
Size: 11514
Super-enhancer rank 408
Number of SE elements: 1
ChIP density(Case|Control): 56427.8112|1461.1266
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APOLD1;
ROSE Overlap APOLD1; CDKN1B;
ROSE Proximal MIR613; GPR19;
ROSE Closest APOLD1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700408 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers