SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700383
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr6:26051206-26066823
Size: 15617
Super-enhancer rank 383
Number of SE elements: 2
ChIP density(Case|Control): 58921.3793|1488.3001
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HIST1H1C ;
ROSE Overlap HIST1H1C ;
ROSE Proximal HIST1H3B ; HIST1H1A ; HIST1H4A ; HFE ; HIST1H3C ; HIST1H4B ; HIST1H2AB ; HIST1H1T ; HIST1H3A ; HIST1H2BB ; HIST1H4C ;
ROSE Closest HIST1H1C ;
Lasso ;
PreSTIGE ;
ABC HIST1H3C ; HIST1H3A ; TRIM38 ; HIST1H1E ; HIST1H2BD ; HIST1H2BG ; HIST1H2AE ; HIST1H2AC ; HIST1H2BC ; HIST1H1T ; HIST1H4C ; LOC108783645 ; HFE ; HIST1H1C ; HIST1H2BB ; HIST1H2AB ; HIST1H3B ; HIST1H4B ; HIST1H4A ;
BETA HIST1H3B ; HIST1H2BC ; HIST1H4C ; TRIM38 ; HFE ; HIST1H2BD ; HIST1H2AB ; HIST1H2AC ; HIST1H4A ; HIST1H1A ; HIST1H2BB ; HIST1H3C ; HIST1H1C ; HIST1H4B ; HIST1H1E ; HIST1H3A ; HIST1H1T ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700383 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers