SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700324
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr2:188289560-188315064
Size: 25504
Super-enhancer rank 324
Number of SE elements: 3
ChIP density(Case|Control): 66190.5312|1956.1568
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR561 ;
ROSE Overlap GULP1 ; MIR561 ;
ROSE Proximal ;
ROSE Closest MIR561 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GULP1 ; LINC01090 ; MIR561 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700324 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers