SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700267
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr19:2149418-2175819
Size: 26401
Super-enhancer rank 267
Number of SE elements: 4
ChIP density(Case|Control): 72346.6603|1520.6976
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DOT1L ;
ROSE Overlap DOT1L ; AP3D1 ;
ROSE Proximal ;
ROSE Closest DOT1L ;
Lasso ;
PreSTIGE ;
ABC AP3D1 ; DOT1L ; OAZ1 ; AMH ; SF3A2 ; PLEKHJ1 ;
BETA JSRP1 ; MIR4321 ; AP3D1 ; MIR1227 ; MIR6789 ; SF3A2 ; MOB3A ; IZUMO4 ; PLEKHJ1 ; DOT1L ; AMH ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700267 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers