SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700104
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr10:100345230-100376995
Size: 31765
Super-enhancer rank 104
Number of SE elements: 5
ChIP density(Case|Control): 132523.58|4987.105
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NCRNA00263 ;
ROSE Overlap NCRNA00263 ; SCD ;
ROSE Proximal PKD2L1 ;
ROSE Closest NCRNA00263 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SCD ; CWF19L1 ; BLOC1S2 ; PKD2L1 ; OLMALINC ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700104 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers