SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700075
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr11:118906171-118939936
Size: 33765
Super-enhancer rank 75
Number of SE elements: 3
ChIP density(Case|Control): 156598.6935|2819.3775
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: BCL9L ;
ROSE Overlap BCL9L ;
ROSE Proximal CXCR5 ; UPK2 ; FOXR1 ;
ROSE Closest BCL9L ;
Lasso ;
PreSTIGE ;
ABC HYOU1 ; VPS11 ;
BETA CCDC84 ; CXCR5 ; TRAPPC4 ; RPL23AP64 ; FOXR1 ; UPK2 ; MIR3656 ; MIR4492 ; RPS25 ; BCL9L ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700075 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers