SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700062
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr19:13835539-13857220
Size: 21681
Super-enhancer rank 62
Number of SE elements: 1
ChIP density(Case|Control): 176611.2579|1669.437
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR23A ;
ROSE Overlap LOC284454 ; MIR24-2 ; MIR23A ; MIR27A ;
ROSE Proximal MIR181C ; ZSWIM4 ; MIR181D ; CC2D1A ; NANOS3 ; C19orf57 ;
ROSE Closest MIR23A ;
Lasso ;
PreSTIGE ;
ABC CCDC130 ;
BETA PODNL1 ; MRI1 ; MIR23A ; ZSWIM4 ; C19orf57 ; CCDC130 ; MIR27A ; NANOS3 ; C19orf53 ; CC2D1A ; MIR181C ; MIR24-2 ; MIR181D ; LOC284454 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700062 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers