SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700020
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr12:88916777-88972206
Size: 55429
Super-enhancer rank 20
Number of SE elements: 4
ChIP density(Case|Control): 342506.8768|5797.8734
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KITLG ;
ROSE Overlap ;
ROSE Proximal ;
ROSE Closest KITLG ;
Lasso ;
PreSTIGE ;
ABC KITLG ; TMTC3 ; CEP290 ;
BETA LOC728084 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700020 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers