SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700006
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr4:168474414-168613424
Size: 139010
Super-enhancer rank 6
Number of SE elements: 12
ChIP density(Case|Control): 490093.656|14026.109
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PALLD ;
ROSE Overlap PALLD ; DDX60L ;
ROSE Proximal PALLD ;
ROSE Closest PALLD ;
Lasso ;
PreSTIGE ;
ABC ;
BETA DDX60L ; PALLD ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700006 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers