SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_040800264
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: G401_Dox
Genomic region: chr1:28504854-28520915
Size: 16061
Super-enhancer rank 264
Number of SE elements: 2
ChIP density(Case|Control): 31253.0999|2385.0585
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RCC1 ;
ROSE Overlap RCC1 ; SNHG3 ;
ROSE Proximal TRNAU1AP ; SNHG3 ;
ROSE Closest RCC1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RCC1 ; PHACTR4 ; RAB42 ; SNHG3 ; SNORA16A ; SNHG12 ; SNORD99 ; TRNAU1AP ; SNORA61 ; SNORA73B ; SNORA44 ; SNORA73A ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_040800264 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers