SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_031100267
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Neuroblastoma
Biosample name: SK-N-AS
Genomic region: chr2:176118697-176141730
Size: 23033
Super-enhancer rank 267
Number of SE elements: 2
ChIP density(Case|Control): 38264.7229|2830.7557
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXD8 ;
ROSE Overlap HOXD10 ; HOXD8 ; HOXD9 ;
ROSE Proximal HOXD4 ; HOXD12 ; EVX2 ; HOXD11 ; MIR10B ; LOC401022 ; HOXD3 ; HOXD1 ; HOXD13 ;
ROSE Closest HOXD8 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HAGLR ; EVX2 ; HOXD11 ; HOXD-AS2 ; MIR7704 ; HOXD8 ; MIR10B ; HOXD13 ; HAGLROS ; HOXD4 ; HOXD10 ; HOXD1 ; HOXD9 ; HOXD12 ; HOXD3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_031100267 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers