SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_031100040
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Neuroblastoma
Biosample name: SK-N-AS
Genomic region: chr11:65470234-65509487
Size: 39253
Super-enhancer rank 40
Number of SE elements: 2
ChIP density(Case|Control): 87035.6769|5189.2466
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MALAT1 ;
ROSE Overlap MALAT1 ;
ROSE Proximal NEAT1 ; MIR612 ; SCYL1 ; LTBP3 ;
ROSE Closest MALAT1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LTBP3 ; SCYL1 ; MIR612 ; SSSCA1 ; FAM89B ; MALAT1 ; NEAT1 ; SSSCA1-AS1 ; EHBP1L1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_031100040 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers