SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_015500040
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: U87_EGFRvIII_shSOX9_FBS
Genomic region: chr12:120229624-120238761
Size: 9137
Super-enhancer rank 40
Number of SE elements: 3
ChIP density(Case|Control): 14441.9422|0
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PXN;
ROSE Overlap PXN;
ROSE Proximal GCN1L1; RPLP0;
ROSE Closest PXN;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_015500040 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers