SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_006400701
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Embryo
Biosample name: DN-Early_G1
Genomic region: chr3:48464945-48475979
Size: 11034
Super-enhancer rank 701
Number of SE elements: 2
ChIP density(Case|Control): 5398.3072|1113.2352
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TREX1;
ROSE Overlap TREX1; SHISA5; ATRIP;
ROSE Proximal PLXNB1; CCDC72; ATRIP; CCDC51;
ROSE Closest TREX1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_006400701 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers