SEdb 2.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_006400107
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Embryo
Biosample name: DN-Early_G1
Genomic region: chr16:3005818-3024664
Size: 18846
Super-enhancer rank 107
Number of SE elements: 3
ChIP density(Case|Control): 10781.7966|1681.0632
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CLDN9;
ROSE Overlap HCFC1R1; CLDN9; THOC6; CLDN6; TNFRSF12A;
ROSE Proximal IL32; KREMEN2; PKMYT1; MMP25; CCDC64B; PAQR4; LOC283875; HCFC1R1;
ROSE Closest CLDN9;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_006400107 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers