SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001001105
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr3:8482149-8510878
Size: 28729
Super-enhancer rank 1105
Number of SE elements: 9
ChIP density(Case|Control): 31044.5574|1301.4237
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC100288428 ;
ROSE Overlap LOC100288428 ; LMCD1 ;
ROSE Proximal ;
ROSE Closest LOC100288428 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LMCD1-AS1 ; LMCD1 ; LINC00312 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001001105 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers