SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_001001080
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr2:47340198-47361692
Size: 21494
Super-enhancer rank 1080
Number of SE elements: 6
ChIP density(Case|Control): 33354.3892|3181.112
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MSH2 ;
ROSE Overlap ;
ROSE Proximal EPCAM ; MIR559 ; MSH2 ;
ROSE Closest EPCAM ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LOC101927043 ; MSH2 ; MIR559 ; EPCAM ; BCYRN1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001001080 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers