SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001001079
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr19:13770225-13798570
Size: 28345
Super-enhancer rank 1079
Number of SE elements: 4
ChIP density(Case|Control): 31995.836|1819.749
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: C19ORF53 ;
ROSE Overlap MRI1 ; C19orf53 ; ZSWIM4 ;
ROSE Proximal CCDC130 ; MRI1 ; MIR27A ; MIR24-2 ; MIR23A ; LOC284454 ;
ROSE Closest C19orf53 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MRI1 ; MIR23A ; ZSWIM4 ; CCDC130 ; MIR27A ; NANOS3 ; C19orf53 ; MIR181C ; MIR24-2 ; MIR181D ; LOC284454 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001001079 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers