SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001001065
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr19:42267636-42282838
Size: 15202
Super-enhancer rank 1065
Number of SE elements: 9
ChIP density(Case|Control): 31293.317|831.5494
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CIC ;
ROSE Overlap ;
ROSE Proximal CIC ; MEGF8 ; PAFAH1B3 ; PRR19 ; TMEM145 ; DEDD2 ; ZNF526 ; ERF ; GSK3A ;
ROSE Closest CIC ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PAFAH1B3 ; ZNF526 ; CIC ; DEDD2 ; TMEM145 ; PRR19 ; MEGF8 ; GSK3A ; ERF ; MIR8077 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001001065 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers