SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_001001029
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr12:27547515-27576028
Size: 28513
Super-enhancer rank 1029
Number of SE elements: 7
ChIP density(Case|Control): 33374.4665|2420.7537
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PPFIBP1 ;
ROSE Overlap PPFIBP1 ;
ROSE Proximal PPFIBP1 ;
ROSE Closest PPFIBP1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PPFIBP1 ; SMCO2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001001029 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers