SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000987
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr3:39146461-39153176
Size: 6715
Super-enhancer rank 987
Number of SE elements: 3
ChIP density(Case|Control): 32378.387|300.832
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CSRNP1 ;
ROSE Overlap CSRNP1 ;
ROSE Proximal GORASP1 ; XIRP1 ; TTC21A ;
ROSE Closest CSRNP1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TTC21A ; GORASP1 ; XIRP1 ; CSRNP1 ; MIR6822 ; WDR48 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000987 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers