SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000974
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr22:35299078-35314444
Size: 15366
Super-enhancer rank 974
Number of SE elements: 4
ChIP density(Case|Control): 33779.0778|1449.0138
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TOM1 ;
ROSE Overlap TOM1 ;
ROSE Proximal HMGXB4 ; TOM1 ; MIR3909 ;
ROSE Closest TOM1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TOM1 ; LINC01399 ; MCM5 ; HMGXB4 ; MIR6069 ; HMOX1 ; MIR3909 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000974 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers