SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000944
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr17:28334369-28348946
Size: 14577
Super-enhancer rank 944
Number of SE elements: 3
ChIP density(Case|Control): 34702.0062|1852.7367
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TNFAIP1 ;
ROSE Overlap POLDIP2 ; TNFAIP1 ; IFT20 ;
ROSE Proximal TMEM97 ; FLJ40504 ; SEBOX ; SARM1 ; VTN ; TMEM199 ;
ROSE Closest TNFAIP1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SLC46A1 ; POLDIP2 ; PPY2 ; IFT20 ; SEBOX ; TMEM199 ; KRT18P55 ; MIR4723 ; TMEM97 ; SARM1 ; TNFAIP1 ; VTN ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000944 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers