SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000923
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr1:151193843-151211412
Size: 17569
Super-enhancer rank 923
Number of SE elements: 3
ChIP density(Case|Control): 35362.8832|2016.9212
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PIP5K1A ;
ROSE Overlap PIP5K1A ;
ROSE Proximal TNFAIP8L2 ; VPS72 ; LYSMD1 ; TMOD4 ; SCNM1 ; PIP5K1A ; PSMD4 ; SEMA6C ;
ROSE Closest PIP5K1A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PIP5K1A ; ZNF687 ; SCNM1 ; VPS72 ; SEMA6C ; TNFAIP8L2-SCNM1 ; LYSMD1 ; TNFAIP8L2 ; PSMD4 ; TMOD4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000923 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers