SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000920
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr20:45335245-45346248
Size: 11003
Super-enhancer rank 920
Number of SE elements: 4
ChIP density(Case|Control): 34217.1294|814.222
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SDC4 ;
ROSE Overlap SDC4 ;
ROSE Proximal SYS1 ; SYS1-DBNDD2 ; RBPJL ; MATN4 ; TP53TG5 ;
ROSE Closest SDC4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR6812 ; RBPJL ; SDC4 ; SLPI ; MATN4 ; PIGT ; DBNDD2 ; TP53TG5 ; SYS1-DBNDD2 ; SYS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000920 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers