SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000916
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr16:88758053-88784581
Size: 26528
Super-enhancer rank 916
Number of SE elements: 8
ChIP density(Case|Control): 36802.2944|3199.2768
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: FAM38A ;
ROSE Overlap FAM38A ;
ROSE Proximal CDT1 ; APRT ;
ROSE Closest FAM38A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PABPN1L ; CTU2 ; APRT ; MIR4722 ; TRAPPC2L ; LOC100289580 ; RNF166 ; SNAI3 ; GALNS ; LOC339059 ; PIEZO1 ; CDT1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000916 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers