SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000897
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr3:129485056-129499934
Size: 14878
Super-enhancer rank 897
Number of SE elements: 4
ChIP density(Case|Control): 35742.9072|1779.4088
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RHO ;
ROSE Overlap IFT122 ;
ROSE Proximal H1FOO ; MBD4 ; RHO ;
ROSE Closest RHO ;
Lasso ;
PreSTIGE ;
ABC ;
BETA IFT122 ; MBD4 ; SNORA7B ; RHO ; H1FOO ; RPL32P3 ; EFCAB12 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000897 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers