SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000724
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr3:157080712-157100262
Size: 19550
Super-enhancer rank 724
Number of SE elements: 3
ChIP density(Case|Control): 40359.02|1927.63
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC100498859 ;
ROSE Overlap LOC100498859 ; LOC339894 ;
ROSE Proximal ;
ROSE Closest LOC100498859 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CCNL1 ; LINC00881 ; LINC00880 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000724 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers