SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000716
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr9:35656546-35662528
Size: 5982
Super-enhancer rank 716
Number of SE elements: 1
ChIP density(Case|Control): 39184.4928|471.9798
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CCDC107 ;
ROSE Overlap C9orf100 ; RMRP ; CCDC107 ;
ROSE Proximal SIT1 ; CCDC107 ; TPM2 ; CD72 ; CA9 ;
ROSE Closest CCDC107 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MSMP ; CD72 ; FAM166B ; MIR4667 ; TPM2 ; SIT1 ; TESK1 ; CREB3 ; CCDC107 ; MIR6852 ; TLN1 ; GBA2 ; CA9 ; RGP1 ; MIR6853 ; ARHGEF39 ; RMRP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000716 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers