SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_001000664
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr5:55596582-55605740
Size: 9158
Super-enhancer rank 664
Number of SE elements: 3
ChIP density(Case|Control): 40678.9202|641.06
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PPAP2A ;
ROSE Overlap ;
ROSE Proximal ;
ROSE Closest PPAP2A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PPAP2A ; MIR5687 ; SLC38A9 ; RNF138P1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000664 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers