SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000623
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr12:120228762-120265425
Size: 36663
Super-enhancer rank 623
Number of SE elements: 7
ChIP density(Case|Control): 45597.7731|4091.5908
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PXN ;
ROSE Overlap PXN ;
ROSE Proximal GCN1L1 ; SIRT4 ; RPLP0 ;
ROSE Closest PXN ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PXN-AS1 ; SIRT4 ; MIR4498 ; GCN1L1 ; RNU4-1 ; RPLP0 ; PXN ; PLA2G1B ; RNU4-2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000623 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers