SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000579
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr16:56605353-56611618
Size: 6265
Super-enhancer rank 579
Number of SE elements: 1
ChIP density(Case|Control): 43190.91|283.178
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MT2A ;
ROSE Overlap MT2A ;
ROSE Proximal MT4 ; MT1E ; MT1A ; MT3 ; MT1DP ; MT1M ; MT1L ; MT1B ; MT1JP ; MT1F ;
ROSE Closest MT2A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MT1B ; MT1E ; MT1IP ; MT1M ; MT1F ; MT1DP ; MT1H ; MT1L ; MT1X ; MT1G ; BBS2 ; MT4 ; MT2A ; MT3 ; MT1A ; MT1JP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000579 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers