SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000541
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr1:16763140-16782140
Size: 19000
Super-enhancer rank 541
Number of SE elements: 3
ChIP density(Case|Control): 49227.1|4518.2
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MST1P9 ;
ROSE Overlap MST1P9 ;
ROSE Proximal ESPNP ;
ROSE Closest MST1P9 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RNU1-1 ; RNU1-27P ; FAM231A ; MIR3675 ; MST1L ; RNU1-2 ; RNVU1-18 ; RNU1-28P ; RNU1-3 ; RNU1-4 ; ESPNP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000541 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers