SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000500
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr2:219440484-219469773
Size: 29289
Super-enhancer rank 500
Number of SE elements: 6
ChIP density(Case|Control): 49735.6509|2873.2509
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SPEG ;
ROSE Overlap SPEG ;
ROSE Proximal GMPPA ; DES ; ACCN4 ;
ROSE Closest SPEG ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SPEG ; GMPPA ; DES ; TMEM198 ; ASIC4 ; DNPEP ; LOC100996693 ; CHPF ; MIR3132 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000500 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers