SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_001000497
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr20:45777955-45784700
Size: 6745
Super-enhancer rank 497
Number of SE elements: 1
ChIP density(Case|Control): 47325.618|344.6695
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: WFDC3 ;
ROSE Overlap WFDC3 ;
ROSE Proximal TNNC2 ; SNX21 ; UBE2C ; DNTTIP1 ;
ROSE Closest WFDC3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA UBE2C ; SNX21 ; ZSWIM3 ; WFDC3 ; ZSWIM1 ; MIR3617 ; SPINT4 ; WFDC13 ; ACOT8 ; WFDC10B ; DNTTIP1 ; TNNC2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000497 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers