SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_001000422
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr3:124807366-124861417
Size: 54051
Super-enhancer rank 422
Number of SE elements: 11
ChIP density(Case|Control): 56056.2921|4540.284
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ITGB5 ;
ROSE Overlap ITGB5 ;
ROSE Proximal ;
ROSE Closest ITGB5 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ITGB5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000422 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers